General Chemistry I · Atoms, Molecules & Ions
Molecules, Ions, and Chemical Formulas
On this page 7 sections
In 30 seconds
Atoms combine in two fundamentally different ways. Molecular compounds form when nonmetal atoms share electrons, producing discrete units called molecules (e.g., H₂O, CO₂). Ionic compounds form when electrons are transferred from a metal to a nonmetal, creating charged particles — cations (positive, from electron loss) and anions (negative, from electron gain) — held together by electrostatic attraction. A chemical formula is the shorthand that reports which elements are present and in what ratio; it comes in two varieties: the empirical formula (simplest whole-number ratio) and the molecular formula (the actual number of each atom in one molecule).
Why this matters
Formulas are the language of chemistry — they encode composition, which is what stoichiometry, reactions, and synthesis all depend on. Knowing whether a substance is molecular or ionic tells you its bonding, its properties (ionic compounds are often brittle solids with high melting points; molecular compounds often have lower melting points), and how to name it. The empirical-vs-molecular distinction is essential in organic chemistry and biochemistry, where the same empirical formula (CH₂O) can describe formaldehyde, glucose, or a host of sugars.
The college version
Key Ideas
- Molecule: two or more atoms held together by covalent (shared-electron) bonds; the smallest unit of a molecular compound that retains its identity.
- Ion: an atom or group of atoms with a net electric charge.
- Cation: positively charged ion (metal atoms lose electrons; e.g., Na⁺, Ca²⁺, Al³⁺).
- Anion: negatively charged ion (nonmetals gain electrons; e.g., Cl⁻, O²⁻, S²⁻).
- Polyatomic ion: a charged group of covalently bonded atoms acting as one unit (e.g., SO₄²⁻ sulfate, NO₃⁻ nitrate, NH₄⁺ ammonium, OH⁻ hydroxide, CO₃²⁻ carbonate, PO₄³⁻ phosphate).
- Empirical formula: simplest whole-number ratio of atoms (H₂O₂ → HO; C₆H₁₂O₆ → CH₂O).
- Molecular formula: actual count of atoms per molecule (H₂O₂, C₆H₁₂O₆).
- Diatomic elements: H₂, N₂, O₂, F₂, Cl₂, Br₂, I₂ — these seven exist as two-atom molecules in their elemental state (memory aid: "H N O F Cl Br I" — the "super-seven").
Equations and Variables
Converting molecular formula ↔ empirical formula:
molecular formula = (empirical formula) × n, where n = (molar mass of molecule) / (molar mass of empirical formula unit)
Variables:
- n = a small whole-number multiplier (dimensionless)
- molar mass of molecule = mass of one mole of the actual molecule (g/mol)
- molar mass of empirical formula unit = mass of one mole of the empirical formula (g/mol)
Ion charges obey charge balance: in a neutral ionic compound, total positive charge = total negative charge.
How It Works or Problem-Solving Method
Determining an empirical formula from mass-percent data:
- Assume a 100.0 g sample, so each % becomes grams.
- Convert grams of each element to moles (divide by atomic mass).
- Divide all mole values by the smallest mole value.
- If needed, multiply all ratios by a small integer to clear fractions (e.g., 1.5 → ×2 → 3).
- Write the formula with those subscripts.
Writing a correct ionic formula: swap the charges as subscripts (criss-cross), then reduce to the lowest ratio, keeping the formula electrically neutral — e.g., Al³⁺ and O²⁻ → Al₂O₃.
Worked Example
Problem 1: A compound is 40.0% carbon, 6.71% hydrogen, and 53.3% oxygen by mass. Find its empirical formula. Its molar mass is 180 g/mol; find the molecular formula.
Assume 100 g → 40.0 g C, 6.71 g H, 53.3 g O.
Moles: C = 40.0/12.01 = 3.33 mol; H = 6.71/1.008 = 6.66 mol; O = 53.3/16.00 = 3.33 mol.
Divide by smallest (3.33): C = 1, H = 2, O = 1 → empirical formula CH₂O.
Empirical-formula mass = 12.01 + 2(1.008) + 16.00 = 30.03 g/mol.
n = 180/30.03 = 6 → molecular formula = (CH₂O)₆ = C₆H₁₂O₆ (glucose).
Problem 2: Write the formula for the ionic compound formed from calcium and chlorine.
Ca is Group 2 → Ca²⁺; Cl is Group 17 → Cl⁻. Criss-cross charges: Ca²⁺ + 2 Cl⁻ → CaCl₂ (one Ca²⁺ balances two Cl⁻).
Problem 3: Name the cation and anion in ammonium sulfate, (NH₄)₂SO₄.
Cation: NH₄⁺ (ammonium, polyatomic). Anion: SO₄²⁻ (sulfate, polyatomic). Two NH₄⁺ ions balance one SO₄²⁻ charge.
Common Confusions
- "The empirical and molecular formulas are always the same." Wrong — they match only when the molecule's atom ratio is already at its simplest (e.g., H₂O); H₂O₂ has molecular H₂O₂ but empirical HO.
- "A polyatomic ion is a molecule." Wrong — a polyatomic ion (like SO₄²⁻) carries a net charge; a molecule is neutral.
- "All elements exist as single atoms." Wrong — seven nonmetals exist as diatomic molecules (H₂, N₂, O₂, F₂, Cl₂, Br₂, I₂) in their standard state.
- "To balance a chemical equation you change subscripts." Wrong — subscripts define the substance's identity; you balance equations by changing coefficients (the numbers in front), never subscripts.

Eli explains
The same idea, in plain words
Explain it like I’m 10
A molecule is like two friends holding hands to stay together — they share, so no one ends up owning more. An ionic compound is more like one kid giving a candy to another: now one is happy-and-positive (cation) and the other is a bit negative (anion), and they stick together because opposites attract. The "empirical formula" is the recipe reduced to its simplest terms — "2 cups flour, 1 cup sugar" instead of "4 cups flour, 2 cups sugar" — same ratio, but the "molecular formula" tells you the real, full amount in one actual batch. Limit of the analogy: hand-holding and candy-sharing are reversible social choices, but chemical bonds involve real energy changes, and ions are attracted by electrostatic force, not by "wanting" anything.
Key takeaways
- Molecules share electrons (covalent); ionic compounds transfer electrons.
- Cation = positive (metal loses e⁻); anion = negative (nonmetal gains e⁻).
- Common polyatomic ions: NH₄⁺, OH⁻, NO₃⁻, CO₃²⁻, SO₄²⁻, PO₄³⁻.
- Empirical formula = simplest ratio; molecular formula = actual atom count.
- molecular = empirical × n; n = (molar mass)/(empirical-formula mass).
- Seven diatomic elements: H₂, N₂, O₂, F₂, Cl₂, Br₂, I₂.
- Ionic formulas must be electrically neutral overall.
- Molecular compound: nonmetals share electrons → molecules.
- Ionic compound: metal transfers e⁻ to nonmetal → cations + anions.
- Cation (+, lost e⁻); anion (−, gained e⁻).
- Polyatomic ions: NH₄⁺, OH⁻, NO₃⁻, SO₄²⁻, CO₃²⁻, PO₄³⁻.
- Empirical = simplest ratio; molecular = actual; molecular = empirical × n.
- Diatomic elements: H₂, N₂, O₂, F₂, Cl₂, Br₂, I₂.
- Balance equations with coefficients, never subscripts.
Study tools & related lessonsYou’ll learn to · Related
You’ll learn to
- Distinguish molecules from ions and molecular compounds from ionic compounds.
- Define cation and anion and predict their formation from electron gain/loss.
- Recognize common polyatomic ions and write their formulas.
- Distinguish empirical formulas from molecular formulas and convert between them.
- List the seven elements that exist as diatomic molecules in nature.
Sources & references
- OpenStax, *Chemistry 2e*, Ch. 2.4, "Chemical Formulas."
- OpenStax, *Chemistry 2e*, Ch. 2.6, "Molecular and Ionic Compounds."
This lesson was adapted from the open educational references above; their licenses and attributions are preserved. See Copyright & Licensing.
Educational content only. It is not medical, legal or professional advice. Found an error? Tell us.
