Organic Chemistry · Biomolecules: Lipids
Prostaglandins and Other Eicosanoids
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In 30 seconds
Eicosanoids are a family of signaling molecules made from 20-carbon polyunsaturated fatty acids — the name comes from Greek eicosa, "twenty." The parent compound is arachidonic acid 20:4 polyunsaturated fatty acid, the common precursor Full entry →, CH3(CH2)4CH=CHCH2CH=CHCH2CH=CHCH2CH=CH(CH2)3COOH (20:4, four cis double bonds), released from membrane phospholipids when a cell is stimulated. From that single precursor, enzymes build three subfamilies:
- Prostaglandins (PG) — a cyclopentane ring with two side chains (the prostanoic acid skeleton)
- Thromboxanes (TX) — a six-membered cyclic ether ring
- Leukotrienes (LT) — straight-chain molecules with conjugated trienes, no ring
Prostaglandins were first found in seminal fluid (hence the name, from the prostate gland) but are made by nearly every tissue. They are local hormones: synthesized on demand at the site of action and degraded within seconds to minutes, unlike endocrine hormones that travel through the blood. This topic covers the arachidonate cascade, the structural signature of each family, their physiological roles, and how aspirin and other NSAIDs intervene in the pathway.
Why this matters
The eicosanoid Signaling lipid derived from a 20-carbon fatty acid Full entry → pathway is the target of the most widely used drugs in the world. Aspirin, ibuprofen, and naproxen — the NSAIDs (nonsteroidal anti-inflammatory drugs) — inhibit cyclooxygenase (COX) Enzyme that converts arachidonate to prostaglandins Full entry →, the enzyme that converts arachidonic acid into prostaglandins. Aspirin does so irreversibly by acetylating a serine in COX's active site; ibuprofen competes reversibly. The result is lower prostaglandin Eicosanoid with a cyclopentane ring (PGE, PGF, PGI) Full entry → production: less pain, less fever, less inflammation — but also less stomach-mucosa protection and altered platelet function, which is why daily low-dose aspirin is used to reduce blood-clot risk. Prostaglandin analogues are used clinically to induce labor and to keep a fetal heart-vessel (the ductus arteriosus) open in newborns awaiting surgery. Understanding the structures explains the selectivity: why PGE and PGF differ in effect, why thromboxanes clot blood while prostacyclin opposes them, and why leukotrienes are the targets of asthma drugs (montelukast blocks their receptor).
The college version
Core Concepts
The arachidonate cascade: release and conversion
Eicosanoids are not stored; they are made on demand. The sequence: a stimulus (injury, infection, hormone) activates phospholipase A₂ Enzyme that releases arachidonate from membranes Full entry →, which cleaves arachidonic acid from membrane phospholipids at position 2. Free arachidonate is then a substrate for two competing enzyme systems:
- Cyclooxygenase (COX-1, COX-2) → prostaglandins (PGG₂, PGH₂ intermediates) and thromboxanes
- Lipoxygenase (LOX) → leukotrienes
Because both pathways compete for the same substrate, blocking COX with an NSAID Nonsteroidal anti-inflammatory drug Full entry → shunts more arachidonate toward leukotriene Ringless eicosanoid with conjugated triene Full entry → synthesis in some tissues — one reason NSAID side effects are complex.
Prostaglandin structure: the prostanoic acid skeleton
All prostaglandins share the prostanoic acid skeleton: a cyclopentane ring with two side chains — one ending in a carboxylic acid (7 carbons from the ring) and one ending in a methyl group (8 carbons). The letters and subscripts encode the functional groups:
- PGE: a ketone (E = "ether-soluble" fraction) on the ring
- PGF: two hydroxyls on the ring (F = "phosphate/fat-soluble" fraction); the α subscript marks stereochemistry
- PGI₂ (prostacyclin): an extra oxygen bridged ring
The subscript number counts double bonds in the side chains. PGE₂ and PGF₂α are the best-studied: PGE₂ dilates blood vessels and causes fever; PGF₂α contracts uterine and bronchial smooth muscle. The same skeleton with different ring substituents produces opposite physiology.
Thromboxanes and leukotrienes
thromboxane Eicosanoid with a six-membered oxygen ring Full entry → A₂ (TXA₂), made in platelets, has a six-membered oxane ring and is a potent promoter of platelet aggregation and vasoconstriction — it is why a cut seals. Prostacyclin (PGI₂), made by blood-vessel endothelium, does the opposite: it inhibits platelet aggregation and dilates vessels. The balance between TXA₂ and PGI₂ controls normal clotting; low-dose aspirin tips that balance by irreversibly inhibiting COX in platelets (which cannot make new enzyme). Leukotrienes (LTC₄, LTD₄, LTE₄) are made by leukocytes; they constrict airways and recruit immune cells, and they are central to asthma. Both families illustrate the general rule: eicosanoids are local, short-lived, and tissue-specific.
Biosynthesis in one line
Arachidonic acid (20:4) → COX → PGG₂ → PGH₂ → (tissue-specific isomerases) → PGE₂, PGF₂α, PGI₂, TXA₂. The committed step is the COX-catalyzed addition of two oxygens; aspirin blocks exactly this step, and COX-2-selective drugs (celecoxib) were designed to preserve stomach-protective COX-1 while blocking inflammatory COX-2 — though cardiovascular risk from selective COX-2 inhibition later complicated that story, a reminder that pathway selectivity is never complete.
Prostaglandins as local hormones: a contrast
Unlike insulin or thyroxine (endocrine, blood-borne), prostaglandins act on the cell that made them or its immediate neighbors (autocrine/paracrine). They are rapidly inactivated (half-lives of seconds to a few minutes in blood), so their effects stay local. This is why the same molecule can mean different things in different tissues, and why systemic drug effects (stomach erosion, bleeding risk) reflect COX inhibition everywhere at once.
How It Works / Step-by-Step Process
Following the arachidonate cascade:
- Stimulus (injury, cytokine, hormone) activates phospholipase A₂.
- Arachidonic acid is cleaved from membrane phospholipids.
- COX oxygenates arachidonate to PGG₂, then PGH₂.
- Tissue-specific enzymes convert PGH₂ to PGE₂, PGF₂α, PGI₂, or TXA₂ (or LOX makes leukotrienes).
- Eicosanoids bind nearby receptors, trigger responses, and are rapidly inactivated.
Reading a prostaglandin name: PGE₂ = prostaglandin (cyclopentane ring), E = ring ketone, ₂ = two double bonds in the side chains; PGF₂α = ring diols, α = the hydroxyl stereochemistry below the ring plane.
Common Confusions
| Common Confusion | Correct Understanding |
|---|---|
| "Prostaglandins are hormones like insulin." | They are local (autocrine/paracrine) mediators, not blood-borne endocrine hormones, and they are destroyed in seconds to minutes. |
| "PGE and PGF differ only in double-bond count." | The letter marks ring functional groups (E = ketone, F = diols); the subscript counts side-chain double bonds. |
| "Thromboxane promotes clotting; so does prostacyclin." | They oppose each other: TXA₂ promotes platelet aggregation, PGI₂ inhibits it; their balance governs hemostasis. |
| "Aspirin and ibuprofen work the same way." | Both inhibit COX, but aspirin acetylates it irreversibly (platelets can't replace it for days); ibuprofen binds reversibly. |
| "NSAIDs only block pain." | They block prostaglandin synthesis everywhere: pain, fever, inflammation down — but stomach-mucosa protection and platelet function are also altered. |
| "Leukotrienes have a cyclopentane ring like prostaglandins." | Leukotrienes have no ring — they are straight chains with a conjugated triene; only prostaglandins/thromboxanes are cyclic. |

Eli explains
The same idea, in plain words
Explain it like I’m 10
Imagine a fire alarm that lives inside your cells. When you get hurt, the cell cuts a fatty acid loose and turns it into little messengers — prostaglandins — that run to the neighbors and shout "swell up, hurt, get hot!" That's inflammation. Aspirin sneaks into the factory and unplugs the machine that builds the messengers, so fewer get made and you feel better. The messengers are gone in seconds, which is why they only affect the place that made them.
Worked example
Example 1: Degree of unsaturation of arachidonic acid
Arachidonic acid is C20H32O2. Confirm that it has four C=C double bonds.
The degree of unsaturation (rings + double bonds) is:
DBE = 2C + 2 - H2
Substituting C = 20, H = 32:
DBE = 2(20) + 2 - 322 = 40 + 2 - 322 = 102 = 5
One degree is the carboxylic acid's C=O; the remaining four are the four cis double bonds of 20:4. The methylene-interrupted pattern — CH=CHCH2CH=CH — keeps every double bond cis and gives the molecule its bent, fluid shape in membranes.
Example 2: Micromoles of arachidonic acid in a biological sample
A research sample contains 20.0 mg of arachidonic acid. How many micromoles is that? (Molar mass of C20H32O2: 20(12.011) + 32(1.008) + 2(15.999) = 240.22 + 32.26 + 32.00 = 304.5 g/mol.)
Convert milligrams to grams, then to moles:
n = 20.0 mg × 1 g1000 mg304.5 g/mol = 0.0200 g304.5 g/mol = 6.57 × 10-5 mol
Convert to micromoles:
n = 6.57 × 10-5 mol × 106 μmol1 mol = 65.7 μmol
Unit check: g × (mol/g) × (μmol/mol) = μmol. Twenty milligrams of arachidonate is about 66 µmol — a scale typical of the tiny, potent quantities at which eicosanoid messengers act.
Key takeaways
- Eicosanoids = signaling lipids from 20-carbon arachidonic acid (20:4): prostaglandins, thromboxanes, leukotrienes.
- Made on demand from membrane phospholipids via phospholipase A₂; not stored; degraded in seconds to minutes.
- Prostaglandins: cyclopentane ring + two side chains (prostanoic acid skeleton); PGE (ketone) vs PGF (diols).
- Thromboxane A₂ (platelets) promotes clotting/vasoconstriction; prostacyclin PGI₂ (endothelium) opposes it — the balance controls hemostasis.
- Leukotrienes: no ring, conjugated trienes; bronchoconstriction — blocked by montelukast-type drugs.
- NSAIDs (aspirin, ibuprofen) inhibit COX: aspirin acetylates COX irreversibly; ibuprofen is reversible.
- COX-1 (housekeeping, stomach protection) vs COX-2 (induced, inflammatory): selectivity drives drug design.
- Eicosanoids are local (autocrine/paracrine) hormones — short-lived, tissue-specific.
Check yourself
5 review questions from the chapter. Try each one, then open the answer.
From what precursor are prostaglandins, thromboxanes, and leukotrienes all made, and how is it released from membranes?
Show answer
Arachidonic acid (20:4), released from membrane phospholipids by phospholipase A₂.
What structural feature defines a prostaglandin, and what do the letter (E/F) and subscript (2) in PGE₂ mean?
Show answer
A cyclopentane ring with two side chains (prostanoic acid skeleton); E = ketone on the ring, F = two ring hydroxyls; the subscript is the number of side-chain double bonds.
Why do thromboxane A₂ and prostacyclin oppose each other, and which tissue makes each?
Show answer
TXA₂ (platelets) aggregates platelets and constricts vessels; PGI₂ (endothelium) inhibits aggregation and dilates vessels — the two balance clotting.
How does aspirin differ mechanistically from ibuprofen at the COX enzyme?
Show answer
Aspirin covalently acetylates a serine in COX's active site (irreversible); ibuprofen binds noncovalently and reversibly.
Why are eicosanoid effects local rather than whole-body?
Show answer
They are synthesized on demand, act on the producing cell or neighbors, and are inactivated within seconds to minutes — no long-distance transport.
Study tools & related lessonsKey vocabulary · Related
Key vocabulary
- eicosanoid
- Signaling lipid derived from a 20-carbon fatty acid
- arachidonic acid
- 20:4 polyunsaturated fatty acid, the common precursor
- prostaglandin
- Eicosanoid with a cyclopentane ring (PGE, PGF, PGI)
- thromboxane
- Eicosanoid with a six-membered oxygen ring
- leukotriene
- Ringless eicosanoid with conjugated triene
- cyclooxygenase (COX)
- Enzyme that converts arachidonate to prostaglandins
- NSAID
- Nonsteroidal anti-inflammatory drug
- autocrine / paracrine
- Acts on the same cell / on nearby cells
- phospholipase A₂
- Enzyme that releases arachidonate from membranes
Sources & references
This lesson was adapted from the open educational references above; their licenses and attributions are preserved. See Copyright & Licensing.
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